News (since July 2008)


Alumna Dr. Chunmei Liu Won the NSF CAREER Award (read details)

 

October

15

Undergraduate students joined the group

Ben Ngyuen, a Biochemistry undergraduate student, and Sang Ngyuen, a Computer Science undergraduate student, joined our research group to train in and to contribute to the research.

October

12

Abdul Samad joins the group

Abdul Samad, a CS Ph.D student with the Fulbright Fellowship has joined the group. Abdul is interested in graph theory and algorithms for computational biology.

September

5

Juber Patel and Deshen Lin join the group

Juber Patel and Deshen Lin have joined the group. Juber is a new Ph.D student in the Institute of Bioinformatics; he has a MS in computer science. Deshen is a second year MS student in the Department of Computer Science, with 5 years of industry experience.

August

17

Alumna Dr. Chunmei Liu won the NSF CAREER award

RNA-Informatics Group alumna Chunmei Liu won the 2009 NSF CAREER award for her project titled, "CAREER: A Complete System for Protein Identification with Computational Approaches". Chunmei received her Ph.D. in Computer Science at University of Georgia in 2006 and is currently an assistant professor at Howard University, Washington DC. The NSF CAREER award is the most prestigious award to faculty in their early careers. Chunmei completed her doctoral dissertation research under the supervision of Liming and Russell.

Congratulations, Chunmei!

August

14

Mika Takata joined the group

Mika is a new Ph.D student of the Institute of Bioinformatics at UGA. She holds an MEng in Computer Science awarded by Waseda University, Japan (in 2009). Her research interests include ab initio prediction of protein tertiary structures and protein classification.

August

8

Liming and Russell attended Benasque RNA Workshop

Liming and Russell attended the Computational Methods for RNA Analysis Workshop, Benasque, Spain Jul 26 -- Aug 08. The RNA Workshop is dedicated to RNA informatics research, organized every three years in the same place, and by invitation only. Liming gave a talk "Homology Search for Pseudoknots and Beyond". The workshop site Benasque is a small village within the Pyrenee mountain about 5 hour bus ride from Barcelona.

May

25

Anuj and Yingfeng attended RECOMB2009

Anuj presented a poster "Phylogenetic study of Three Bacterial RNA Secondary Structures" in RECOMB 2009 (Tucson, Arizona, May 18-21).

May

8

Congratulations Dong and Yong.

Dong and Yong were awarded with MS. in Computer Science and graduated from UGA on May 8, 2009. Congratulations!

April

14

Sal LaMarca joins the group.

Sal LaMarca joined the group. He is a CS PhD student with experience in machine learning and evolutionary computation.

February/h1>

24

TRFolder released.

TRFolder is a utility program capable of searching for the core structure (including pseudoknots and triple helices) of telomerase RNAs. It consists of a set of functions for telomerase RNA (TR) specific structure prediction. Unlike existing general purpose structure prediction programs, TRFolder works progressively to predict core TR elements pseudoknots, triple helices, telomere repeat template boundary elements, and core-closing stems that occur in TRs.

January/h1>

10

Amir Manzour and Timothy Shaw joining the group.

Amir Manzour and Tim Shaw, graduate students of the Bioinformatics program in the IOB have joined our group. Amir's research experience is in information theory based study of disease association and has just published a paper in that area. Tim has a BS in Computer Science from GaTech and is interested in evolution and RNA folding energy functions.

December

18

Dr. Malmberg elected a Fellow of AAAS. Congratulations!

Dr. Russell Malmberg has been named Fellow of the American Association for the Advancement of Science. Election as a fellow is an honor bestowed upon AAAS members by their peers. Dr. Malmberg has made distinguished contributions to the field of plant biology, and for studies of biochemical genetics, evolution and bioinformatics. Congratulations! See Frankin News.

November

6

Ying Zheng is visiting the group.

Ying Zheng, a computer science Ph.D student at CSU is visiting the RNA-Informatics group. She will do research with us until next November. Her research experience is in parameterized algorithms, complexity theory, and computer networks.

October

31

RNATOPS-W web server is online!

RNATOPS-W based on RNATOPS versions 1.2 has been released with the additional functions of automatic and manual HMM and substructure filter selections.

September

1

Amy Liu and Xingran Xue joined the group.

New Computer Science graduate students Amy Liu and Xingran Xue have joined the RNA-Informatics group.

August

15

RNATOPS v1.1 and v1.2 are available!

RNATOPS (versions 1.1 and 1.2) have been released with the additional function of automatic HMM filter selection. Version 1.1 still needs to manually handl the transition from filtering to whole structure search; while version 1.2 makes the connection fully automatic.

August

2

Congratulations, Dr. Che!

Our former group member, Dongsheng Che received his Ph.D. degree in Computer Science on August 2. He will join East Stroudsburg University as an assistant professor in Computer Science in the Fall.

Click to see full size pictures.

July

27

RNATOPS publicized!

RNATOPS (version 1.0) was initially posted on the web site in June and is now formally publicized with the acceptance of our paper [Huang et al., 2008] to Bioinformatics journal. Version 1.1 will be released soon with the additional function of automatic HMM filter selection.

July

18

Yong's new born baby boy, Congratulations!

Brayden Wu was born at Athens Regional Medical Center at 3:45pm, July 18th, 2008. He was 8 lbs, 4 oz and 20 inches.

Click to enlarge the pictures.