News (since July 2008)
 
October
15
Undergraduate students joined the group
Ben Ngyuen, a Biochemistry undergraduate student, and Sang Ngyuen, a
Computer Science undergraduate student, joined our research group to
train in and to contribute to the research.
October
12
Abdul Samad joins the group
Abdul Samad, a CS Ph.D student with the Fulbright Fellowship
has
joined the group.
Abdul is interested in graph theory and algorithms for computational
biology.
September
5
Juber Patel and Deshen Lin join the group
Juber Patel and Deshen Lin
have joined the group.
Juber is a new Ph.D student in the Institute of Bioinformatics; he has a MS in computer science.
Deshen is a second year MS student in the Department of Computer
Science, with 5 years of industry experience.
August
17
Alumna Dr. Chunmei Liu won the NSF CAREER award
RNA-Informatics Group alumna Chunmei Liu won the 2009 NSF CAREER award for her
project titled, "CAREER: A Complete System for Protein Identification with Computational
Approaches". Chunmei received her Ph.D. in Computer Science at University of Georgia in 2006
and is currently an assistant professor at Howard University, Washington DC. The NSF CAREER
award is the most prestigious award to faculty in their early careers.
Chunmei completed her doctoral dissertation research under the supervision of Liming and Russell.
Congratulations, Chunmei!
August
14
Mika Takata joined the group
Mika is a new Ph.D student of the Institute of Bioinformatics at UGA.
She holds an MEng in Computer Science awarded by Waseda University, Japan (in 2009). Her research
interests include ab initio prediction of protein tertiary structures
and protein classification.
August
8
Liming and Russell attended Benasque RNA Workshop
Liming and Russell attended the Computational Methods for RNA
Analysis Workshop, Benasque, Spain Jul 26 -- Aug 08.
The RNA Workshop is dedicated to RNA informatics research, organized every three years in the same place, and by invitation only.
Liming gave a talk "Homology Search for Pseudoknots and Beyond". The workshop site Benasque is a small village within the Pyrenee
mountain about 5 hour bus ride from Barcelona.
May
25
Anuj and Yingfeng attended
RECOMB2009
Anuj presented a poster "Phylogenetic study of Three Bacterial RNA
Secondary Structures" in RECOMB 2009 (Tucson, Arizona, May 18-21).

May
8
Congratulations Dong and Yong.
Dong and Yong were awarded with MS. in Computer Science and graduated from UGA on May 8,
2009.
Congratulations!
April
14
Sal LaMarca joins the group.
Sal LaMarca joined the group. He is a CS PhD student with experience in
machine learning and evolutionary computation.
February/h1>
24
TRFolder released.
TRFolder is a utility program capable of searching for the core structure (including pseudoknots
and triple helices) of telomerase RNAs. It consists of a set of functions for telomerase RNA (TR)
specific structure prediction. Unlike existing general purpose structure prediction programs,
TRFolder works progressively to predict core TR elements pseudoknots, triple helices, telomere
repeat template boundary elements, and core-closing stems that occur in TRs.
January/h1>
10
Amir Manzour and Timothy Shaw joining the group.
Amir Manzour and Tim Shaw, graduate
students of the
Bioinformatics program in the IOB have joined our group. Amir's research experience is in
information theory based study of disease association and has just
published a paper in that area. Tim has a BS in Computer Science from
GaTech and is interested in evolution and RNA folding energy functions.
December
18
Dr. Malmberg elected a Fellow of AAAS. Congratulations!
Dr. Russell Malmberg
has been named Fellow of the American Association for the Advancement
of Science. Election as a fellow is an honor bestowed upon AAAS members
by their peers. Dr. Malmberg has made distinguished contributions to the
field of plant biology, and for studies of biochemical genetics,
evolution and bioinformatics. Congratulations! See Frankin
News.
November
6
Ying Zheng is visiting the group.
Ying Zheng, a computer science Ph.D student at CSU is visiting the RNA-Informatics group. She will do
research with us until next November. Her research experience is in parameterized algorithms,
complexity theory, and computer networks.
October
31
RNATOPS-W web server is online!
RNATOPS-W based on RNATOPS versions 1.2
has been released with the additional functions of automatic and
manual HMM and substructure filter
selections.
September
1
Amy Liu and Xingran Xue joined the group.
New Computer Science graduate students Amy Liu and Xingran Xue have joined the RNA-Informatics group.
August
15
RNATOPS v1.1 and v1.2 are available!
RNATOPS (versions 1.1 and 1.2)
have been released with the additional function of automatic HMM filter
selection. Version 1.1 still needs to manually handl the transition from
filtering to whole structure search; while version 1.2 makes the
connection fully automatic.
August
2
Congratulations, Dr. Che!
Our former group member, Dongsheng Che received his Ph.D. degree in Computer Science on
August 2. He will join East Stroudsburg University as an assistant
professor in Computer Science in the Fall.
Click to see full size pictures.
July
27
RNATOPS publicized!
RNATOPS (version 1.0)
was initially posted on the web site in June and is now
formally publicized with the acceptance of our paper [Huang et
al., 2008] to Bioinformatics journal. Version 1.1 will be
released
soon with the additional function of automatic HMM filter selection.
July
18
Yong's new born baby boy,
Congratulations!
Brayden Wu was born at Athens Regional Medical Center at
3:45pm, July 18th, 2008. He was 8 lbs, 4 oz and 20 inches.
Click to enlarge the pictures.